Common MaxEnt java syntax

Environmental Variables:

environmentallayers=C:\Users\Jason\Desktop\Climate

or   -e=C:\Users\Jason\Desktop\Climate

 

Output Directory:

Outputdirectory= C:\Users\Jason\Desktop\Models

or –o=C:\Users\Jason\Desktop\Models

 

Feature classes:         

Example: -q -h -p nothreshold

linear or -l

quadratic  or -q

product  or -p

threshold

hinge or -h

autofeature or -A

 

Output Pictures

pictures=true

 

Biasfile

biasfile=C:\Users\Jason\Desktop\Furcifer_pardalis\GISinputs\BiasFileAB.asc

biastype=3

 

Beta Multiplier

betamultiplier=1  (any integer)

 

Threshold

“applythresholdrule=minimum training presence”

“applythresholdrule=10 percentile training presence”

“applythresholdrule=fixed cumulative value 1”

“applythresholdrule=fixed cumulative value 5”

“applythresholdrule=fixed cumulative value 10”

“applythresholdrule=equal training sensitivity and specificity”

“applythresholdrule=maximum training sensitivity and specificity”

“applythresholdrule=equate entropy of thresholded and original distributions”

 

Autorun

autorun=true or –a  (this runs the script and should  always be on)

 

Exclude Environmental Variable

-N veg -N soil -N MaskTemp -N geo -N bio_99

 

Show/Hide GUI

visible=false or –z

 

Show /Hide Warnings

warnings=false

 

Projection Layers

Projectionlayers= C:\Users\Jason\Desktop\LGM,C:\Users\Jason\Desktop\2080

or -j= C:\Users\Jason\Desktop\LGM,C:\Users\Jason\Desktop\2080

 

Skip if output exists

-S

 

Jackknife Environmental Variables

-J

 

Output Response Curves

-P

 

Do not clamp  

(default is to clamp)

nodoclamp

 

Do not extrapolate

(default is to extrapolate)

noextrapolate

 

Replicates

replicates=10

 

Replicate Type

replicatetype=crossvalidate

replicatetype=bootstrap

replicatetype=subsample

 

Random Test Points

Randomtestpoints=20 or -X=20

 

Output Format

Outputformat=cloglog

 

Write Plot Data

writeplotdata=true

 

Fade by Clamping

fadebyclamping=true